go-pkg/lsm2/sst.go
2024-11-02 09:00:17 -06:00

642 lines
15 KiB
Go

package lsm2
// [Sour.is|size] [size|hash][data][hash|flag|size]... [prev|count|flag|size]
import (
"encoding/binary"
"errors"
"fmt"
"hash/fnv"
"io"
"iter"
)
const (
TypeUnknown uint64 = iota
TypeSegment
TypeCommit
TypePrevCommit
headerSize = 10
maxCommitSize = 4 * binary.MaxVarintLen64
minCommitSize = 3
maxBlockSize = 2 * binary.MaxVarintLen64
minBlockSize = 2
)
var (
Magic = [10]byte([]byte("Sour.is\x00\x00\x00"))
Version = uint8(1)
hash = fnv.New64a
ErrDecode = errors.New("decode")
)
type header struct {
end uint64
extra []byte
}
func (h *header) UnmarshalBinary(data []byte) error {
if len(data) != 10 {
return fmt.Errorf("%w: bad data", ErrDecode)
}
h.extra = append(h.extra, data...)
var n int
h.end, n = binary.Uvarint(h.extra)
reverse(h.extra)
h.extra = h.extra[:len(h.extra)-n]
return nil
}
// Commit1: [magic>|<end]{10} ... [<count][<size][<flag]{3..30}
// +---------|--------------------------------> end = seek to end of file
// <---|-------------+ size = seek to magic header
// <---|-------------+10 size + 10 = seek to start of file
// <-----------------------------T+10----------------> 10 + size + trailer = full file size
// Commit2: [magic>|<end]{10} ... [<count][<size][<flag]{3..30} ... [<prev][<count][<size][<flag]{4..40}
// <---|---------+
// <-------------+T----------------->
// +--------|------------------------------------------------------------------------->
// <-------------------------------------|----------------+
// prev = seek to last commit <---|-+
// prev + trailer = size of commit <----T+--------------------------------->
// Block: [hash>|<end]{10} ... [<size][<flag]{2..20}
// +---------|------------------------> end = seek to end of block
// <---|-+ size = seek to end of header
// <-------------------|-+10 size + 10 = seek to start of block
// <---------------------T+10---------------> size + 10 + trailer = full block size
type Commit struct {
flag uint64 // flag values
size uint64 // size of the trailer
count uint64 // number of entries
prev uint64 // previous commit
tsize int
}
// Append marshals the trailer into binary form and appends it to data.
// It returns the new slice.
func (h *Commit) AppendTrailer(data []byte) []byte {
h.flag |= TypePrevCommit
if h.prev == 0 {
h.flag &= TypeCommit
}
size := len(data)
data = binary.AppendUvarint(data, h.size)
data = binary.AppendUvarint(data, h.flag)
data = binary.AppendUvarint(data, h.count)
if h.prev != 0 {
data = binary.AppendUvarint(data, h.prev)
}
reverse(data[size:])
return data
}
// UnmarshalBinary implements encoding.BinaryUnmarshaler.
// It reads a trailer from binary data, and sets the fields
// of the receiver to the values found in the header.
func (h *Commit) UnmarshalBinary(data []byte) error {
if len(data) < minCommitSize {
return fmt.Errorf("%w: bad data", ErrDecode)
}
var n int
h.size, n = binary.Uvarint(data)
data = data[n:]
h.tsize += n
h.flag, n = binary.Uvarint(data)
data = data[n:]
h.tsize += n
h.count, n = binary.Uvarint(data)
data = data[n:]
h.tsize += n
h.prev = h.size
if h.flag&TypePrevCommit == TypePrevCommit {
h.prev, n = binary.Uvarint(data)
h.tsize += n
}
return nil
}
type Block struct {
header
size uint64
flag uint64
tsize int
}
func (h *Block) AppendHeader(data []byte) []byte {
size := len(data)
data = append(data, make([]byte, 10)...)
copy(data, h.extra)
if h.size == 0 {
return data
}
hdata := binary.AppendUvarint(make([]byte, 0, 10), h.end)
reverse(hdata)
copy(data[size+10-len(hdata):], hdata)
return data
}
// AppendTrailer marshals the footer into binary form and appends it to data.
// It returns the new slice.
func (h *Block) AppendTrailer(data []byte) []byte {
size := len(data)
h.flag |= TypeSegment
data = binary.AppendUvarint(data, h.size)
data = binary.AppendUvarint(data, h.flag)
reverse(data[size:])
return data
}
// UnmarshalBinary implements encoding.BinaryUnmarshaler.
// It reads a footer from binary data, and sets the fields
// of the receiver to the values found in the footer.
func (h *Block) UnmarshalBinary(data []byte) error {
if len(data) < minBlockSize {
return fmt.Errorf("%w: bad data", ErrDecode)
}
var n int
h.size, n = binary.Uvarint(data)
data = data[n:]
h.tsize += n
h.flag, n = binary.Uvarint(data)
data = data[n:]
h.tsize += n
copy(h.extra, data[:8])
return nil
}
type logFile struct {
header
Commit
}
func (h *logFile) AppendMagic(data []byte) []byte {
size := len(data)
data = append(data, Magic[:]...)
if h.end == 0 {
return data
}
hdata := binary.AppendUvarint(make([]byte, 0, 10), h.end)
reverse(hdata)
copy(data[size+10-len(hdata):], hdata)
return data
}
func (h *logFile) UnmarshalBinary(data []byte) error {
return h.header.UnmarshalBinary(data)
}
// WriteLogFile writes a log file to w, given a list of segments.
// The caller is responsible for calling WriteAt on the correct offset.
// The function will return an error if any of the segments fail to write.
// The offset is the initial offset of the first segment, and will be
// incremented by the length of the segment on each write.
//
// The log file is written with the following format:
// - A header with the magic, version, and flag (Dirty)
// - A series of segments, each with:
// - A footer with the length and hash of the segment
// - The contents of the segment
// - A header with the magic, version, flag (Clean), and end offset
func WriteLogFile(w io.WriterAt, segments ...io.Reader) error {
_, err := w.WriteAt(Magic[:], 0)
if err != nil {
return err
}
lf := &LogWriter{
WriterAt: w,
}
return lf.writeIter(w, iter.Seq[io.Reader](func(yield func(io.Reader) bool) {
for _, s := range segments {
if !yield(s) {
return
}
}
}))
}
type rw interface {
io.ReaderAt
io.WriterAt
}
func AppendLogFile(rw rw, segments ...io.Reader) error {
logFile, err := ReadLogFile(rw)
if err != nil {
return err
}
lf := &LogWriter{
WriterAt: rw,
logFile: logFile.logFile,
}
return lf.writeIter(rw, iter.Seq[io.Reader](func(yield func(io.Reader) bool) {
for _, s := range segments {
if !yield(s) {
return
}
}
}))
}
func WriteIter(w io.WriterAt, segments iter.Seq[io.Reader]) error {
_, err := w.WriteAt(Magic[:], 0)
if err != nil {
return err
}
lf := &LogWriter{
WriterAt: w,
}
return lf.writeIter(w, segments)
}
func (lf *LogWriter) writeIter(w io.WriterAt, segments iter.Seq[io.Reader]) error {
for s := range segments {
err := lf.writeSegment(s)
if err != nil {
return err
}
lf.count++
}
// Write the footer to the log file.
// The footer is written at the current end of file position.
n, err := lf.WriteAt(lf.AppendTrailer(make([]byte, 0, maxCommitSize)), int64(lf.end)+10)
if err != nil {
// If there is an error, return it.
return err
}
lf.end += uint64(n)
_, err = w.WriteAt(lf.AppendMagic(make([]byte, 0, 10)), 0)
return err
}
type LogWriter struct {
logFile
io.WriterAt
}
// writeSegment writes a segment to the log file at the current end of file position.
// The segment is written in chunks of 1024 bytes, and the hash of the segment
func (lf *LogWriter) writeSegment(segment io.Reader) error {
h := hash()
head := Block{}
start := int64(lf.end) + 10
end := int64(lf.end) + 10
// Write the header to the log file.
// The footer is written at the current end of file position.
n, err := lf.WriteAt(make([]byte, headerSize), start)
if err != nil {
// If there is an error, return it.
return err
}
end += int64(n)
lf.size += uint64(n)
lf.end += uint64(n)
// Write the segment to the log file.
// The segment is written in chunks of 1024 bytes.
for {
// Read a chunk of the segment.
buf := make([]byte, 1024)
n, err := segment.Read(buf)
if err != nil {
// If the segment is empty, break the loop.
if err == io.EOF {
break
}
// If there is an error, return it.
return err
}
// Compute the hash of the chunk.
h.Write(buf[:n])
// Write the chunk to the log file.
// The chunk is written at the current end of file position.
_, err = lf.WriteAt(buf[:n], end)
if err != nil {
// If there is an error, return it.
return err
}
// Update the length of the segment.
end += int64(n)
head.size += uint64(n)
}
head.extra = h.Sum(nil)
head.end += head.size
// Write the footer to the log file.
// The footer is written at the current end of file position.
n, err = lf.WriteAt(head.AppendTrailer(make([]byte, 0, maxBlockSize)), end)
if err != nil {
// If there is an error, return it.
return err
}
end += int64(n)
head.end += uint64(n)
// Update header to the log file.
// The footer is written at the current end of file position.
_, err = lf.WriteAt(head.AppendHeader(make([]byte, 0, headerSize)), start)
if err != nil {
// If there is an error, return it.
return err
}
// Update the end of file position.
lf.size += head.end
lf.end += head.end
return nil
}
// reverse reverses a slice in-place.
func reverse[T any](b []T) {
l := len(b)
for i := 0; i < l/2; i++ {
b[i], b[l-i-1] = b[l-i-1], b[i]
}
}
type LogReader struct {
logFile
io.ReaderAt
Err error
}
// ReadLogFile reads a log file from the given io.ReaderAt. It returns a pointer to a LogFile, or an error if the file
// could not be read.
func ReadLogFile(reader io.ReaderAt) (*LogReader, error) {
header := make([]byte, headerSize)
n, err := rsr(reader, 0, 10).ReadAt(header, 0)
if err != nil {
return nil, err
}
header = header[:n]
logFile := &LogReader{ReaderAt: reader}
err = logFile.header.UnmarshalBinary(header)
if err != nil {
return nil, err
}
if logFile.end == 0 {
return logFile, nil
}
commit := make([]byte, maxCommitSize)
n, err = rsr(reader, 10, int64(logFile.end)).ReadAt(commit, 0)
if n == 0 && err != nil {
return nil, err
}
commit = commit[:n]
err = logFile.Commit.UnmarshalBinary(commit)
return logFile, err
}
// Iterate reads the log file and calls the given function for each segment.
// It passes an io.Reader that reads from the current segment. It will stop
// calling the function if the function returns false.
func (lf *LogReader) Iter() iter.Seq2[uint64, io.Reader] {
var commits []*Commit
for commit := range lf.iterCommits() {
commits = append(commits, &commit)
}
if lf.Err != nil {
return func(yield func(uint64, io.Reader) bool) {}
}
reverse(commits)
return func(yield func(uint64, io.Reader) bool) {
start := int64(10)
for _, commit := range commits {
size := int64(commit.prev)
it := iterBlocks(io.NewSectionReader(lf, start, size), size)
for i, block := range it {
if !yield(i, block) {
return
}
}
start += size + int64(commit.tsize)
}
}
}
func iterBlocks(r io.ReaderAt, end int64) iter.Seq2[uint64, io.Reader] {
var start int64
var i uint64
return func(yield func(uint64, io.Reader) bool) {
for start < end {
block := &Block{}
buf := make([]byte, 10)
n, err := rsr(r, int64(start), 10).ReadAt(buf, 0)
if n == 0 && err != nil {
return
}
start += int64(n)
if err := block.header.UnmarshalBinary(buf); err != nil {
return
}
buf = make([]byte, maxBlockSize)
n, err = rsr(r, int64(start), int64(block.end)).ReadAt(buf, 0)
if n == 0 && err != nil {
return
}
buf = buf[:n]
err = block.UnmarshalBinary(buf)
if err != nil {
return
}
if !yield(i, io.NewSectionReader(r, int64(start), int64(block.size))) {
return
}
i++
start += int64(block.end)
}
}
}
func (lf *LogReader) iterCommits() iter.Seq[Commit] {
eof := lf.end + 10
if eof <= 10 {
return func(yield func(Commit) bool) {}
}
offset := eof - 10 - lf.prev - uint64(lf.tsize)
return func(yield func(Commit) bool) {
if !yield(lf.Commit) {
return
}
for offset > 10 {
commit := Commit{}
buf := make([]byte, maxCommitSize)
n, err := rsr(lf, 10, int64(offset)).ReadAt(buf, 0)
if n == 0 && err != nil {
lf.Err = err
return
}
buf = buf[:n]
err = commit.UnmarshalBinary(buf)
if err != nil {
lf.Err = err
return
}
if !yield(commit) {
return
}
offset -= commit.prev + uint64(commit.tsize)
}
}
}
// func (lf *LogReader) Rev() iter.Seq2[uint64, io.Reader] {
// end := lf.end + 10
// i := lf.count
// return func(yield func(uint64, io.Reader) bool) {
// for commit := range lf.iterCommits() {
// end -= uint64(commit.tsize)
// start := end - commit.prev - uint64(commit.tsize)
// for start > end{
// block := &Block{}
// buf := make([]byte, min(maxBlockSize, commit.size))
// n, err := lf.ReaderAt.ReadAt(buf, max(0, int64(end)-int64(len(buf))))
// if n == 0 && err != nil {
// lf.Err = err
// return
// }
// buf = buf[:n]
// err = block.UnmarshalBinary(buf)
// if err != nil {
// lf.Err = err
// return
// }
// if !yield(i, io.NewSectionReader(lf, int64(end-block.size)-int64(block.tsize), int64(block.size))) {
// return
// }
// end -= block.size + 10 + uint64(block.tsize)
// i--
// }
// }
// }
// }
func iterOne[I, T any](it iter.Seq2[I, T]) iter.Seq[T] {
return func(yield func(T) bool) {
for _, v := range it {
if !yield(v) {
return
}
}
}
}
func rsr(r io.ReaderAt, offset, size int64) *revSegmentReader {
r = io.NewSectionReader(r, offset, size)
return &revSegmentReader{r, size}
}
type revSegmentReader struct {
io.ReaderAt
size int64
}
func (r *revSegmentReader) ReadAt(data []byte, offset int64) (int, error) {
if offset < 0 {
return 0, errors.New("negative offset")
}
if offset > int64(r.size) {
return 0, io.EOF
}
o := r.size - int64(len(data)) - offset
d := int64(len(data))
if o < 0 {
d = max(0, d+o)
}
i, err := r.ReaderAt.ReadAt(data[:d], max(0, o))
reverse(data[:i])
return i, err
}
// rdr : 0 1 2|3 4 5 6|7 8 9 10
// rsr 6,4: 3 2 1 0
// 6
// ------- -4
// 0 1 2 3
// offset - size
// rdr : 0 1 2|3 4 5 6|7 8 9 10
// 0 1 2 3
// offset=0 |-------| d[:4], o=3 3-0=3
// offset=1 _|----- | d[:3], o=3 3-1=2
// offset=2 ___|--- | d[:2], o=3 3-2=1
// offset=3 _____|- | d[:1], o=3 3-3=0
// offset=4+_____| | d[:0], o=3 3-4=0
// rdr : 0 1 2|3 4 5 6|7 8 9 10
// offset=0 |-------| d[:4], o=0 -> 3
// offset=0 | -----| d[:3], o=1 -> 4
// offset=0 | ---| d[:2], o=2 -> 5
// offset=0 | -| d[:1], o=3 -> 6
// offset=0 | | d[:0], o=4+-> 7
// rdr : 0 1 2|3 4 5 6|7 8 9 10
// offset=4 ___| | d[:0], o=0
// offset=3 _|- | d[:1], o=0
// offset=2 |--- | d[:2], o=0
// offset=1 | --- | d[:2], o=1
// offset=0 | ---| d[:2], o=2
// offset=-1 | -|_ d[:2], o=3
// offset=-2 | |___ d[:2], o=4+
// o = max(0, offset - len)
// d =